3d u-net based brain tumor segmentation and survival days prediction

Document Type

Conference Proceeding

Publication Date

1-1-2020

Abstract

Past few years have witnessed the prevalence of deep learning in many application scenarios, among which is medical image processing. Diagnosis and treatment of brain tumors requires an accurate and reliable segmentation of brain tumors as a prerequisite. However, such work conventionally requires brain surgeons significant amount of time. Computer vision techniques could provide surgeons a relief from the tedious marking procedure. In this paper, a 3D U-net based deep learning model has been trained with the help of brain-wise normalization and patching strategies for the brain tumor segmentation task in the BraTS 2019 competition. Dice coefficients for enhancing tumor, tumor core, and the whole tumor are 0.737, 0.807 and 0.894 respectively on the validation dataset. These three values on the test dataset are 0.778, 0.798 and 0.852. Furthermore, numerical features including ratio of tumor size to brain size and the area of tumor surface as well as age of subjects are extracted from predicted tumor labels and have been used for the overall survival days prediction task. The accuracy could be 0.448 on the validation dataset, and 0.551 on the final test dataset.

Identifier

85085472859 (Scopus)

ISBN

[9783030466398]

Publication Title

Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics

External Full Text Location

https://doi.org/10.1007/978-3-030-46640-4_13

e-ISSN

16113349

ISSN

03029743

First Page

131

Last Page

141

Volume

11992 LNCS

Grant

61871420

Fund Ref

National Natural Science Foundation of China

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