RADAR: A web server for RNA data analysis and research

Document Type

Article

Publication Date

7-1-2007

Abstract

RADAR is a web server that provides a multitude of functionality for RNA data analysis and research. It can align structure-annotated RNA sequences so that both sequence and structure information are taken into consideration during the alignment process. This server is capable of performing pairwise structure alignment, multiple structure alignment, database search and clustering. In addition, RADAR provides two salient features: (i) constrained alignment of RNA secondary structures, and (ii) prediction of the consensus structure for a set of RNA sequences. RADAR will be able to assist scientists in performing many important RNA mining operations, including the understanding of the functionality of RNA sequences, the detection of RNA structural motifs and the clustering of RNA molecules, among others. The web server together with a software package for download is freely accessible at http://datalab.njit.edu/ biodata/rna/RSmatch/server.htm and http://www.ccrnp.ncifcrf.gov/bshapiro/. © 2007 The Author(s).

Identifier

34547575675 (Scopus)

Publication Title

Nucleic Acids Research

External Full Text Location

https://doi.org/10.1093/nar/gkm253

e-ISSN

13624962

ISSN

03051048

PubMed ID

17517784

First Page

W300

Last Page

W304

Issue

SUPPL.2

Volume

35

Grant

ZIABC008382

Fund Ref

National Institutes of Health

This document is currently not available here.

Share

COinS