Toward an integrated RNA motif database
Document Type
Conference Proceeding
Publication Date
1-1-2007
Abstract
In this paper we present the design and implementation of an RNA structural motif database, called RmotifDB. The structural motifs stored in RmotifDB come from three sources: (1) collected manually from biomedical literature; (2) submitted by scientists around the world; and (3) discovered by a wide variety of motif mining methods. We present here a motif mining method in detail. We also describe the interface and search mechanisms provided by RmotifDB as well as techniques used to integrate RmotifDB with the Gene Ontology. The RmotifDB system is fully operational and accessible on the Internet at http://datalab.njit.edu/bioinfo/ © Springer-Verlag Berlin Heidelberg 2007.
Identifier
34547395842 (Scopus)
ISBN
[3540732543, 9783540732549]
Publication Title
Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics
External Full Text Location
https://doi.org/10.1007/978-3-540-73255-6_5
e-ISSN
16113349
ISSN
03029743
First Page
27
Last Page
36
Volume
4544 LNBI
Recommended Citation
Wang, Jason T.L.; Wen, Dongrong; Shapiro, Bruce A.; Herbert, Katherine G.; Li, Jing; and Ghosh, Kaushik, "Toward an integrated RNA motif database" (2007). Faculty Publications. 13742.
https://digitalcommons.njit.edu/fac_pubs/13742
